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caporaso-lab
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genome-sampler
https://caporasolab.us/genome-sampler/
BSD 3-Clause "New" or "Revised" License
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Bump actions/download-artifact from 1 to 4.1.7 in /.github/workflows
#100
dependabot[bot]
opened
3 weeks ago
0
ci/maint: update to use latest QIIME 2
#99
gregcaporaso
closed
1 year ago
0
MAINT: moving Selection type, IDSelection formats to q2-types
#98
lizgehret
opened
1 year ago
1
ci/maint: use latest qiime2 staging env
#97
thermokarst
closed
3 years ago
0
ci: handle conda virtual packages
#96
thermokarst
closed
3 years ago
0
ci: new set-env api
#95
thermokarst
closed
3 years ago
0
address memory issue with large GISAID files
#94
gregcaporaso
closed
3 years ago
15
Error in rule view_context_seqs
#93
fhsantanna
opened
3 years ago
0
don't merge!!
#92
gregcaporaso
closed
3 years ago
0
VER: 2020.11.0.dev0
#91
thermokarst
closed
3 years ago
0
CI: set master CI `alp` target to "staging"
#90
thermokarst
closed
3 years ago
0
LOCK: prevent accidental package publication
#89
thermokarst
closed
3 years ago
4
BUG: Missing versioneer jazz
#88
thermokarst
closed
3 years ago
2
MAINT: add snakemake to env file
#87
ebolyen
closed
3 years ago
0
CI/BUG: incorrect package names
#86
thermokarst
closed
3 years ago
0
IMP: use config and cores in snakemake
#85
ebolyen
closed
3 years ago
0
Benchmarks
#84
ebolyen
closed
3 years ago
1
DOC: update install instructions for conda envs
#83
thermokarst
closed
3 years ago
1
decrease frequency of stochastic test failures
#82
gregcaporaso
closed
3 years ago
0
ENH/API: add a method to compute sliding windows over features
#81
wasade
opened
3 years ago
12
Stochastic test failure in TestSubsampleNeighbors.test_sample_cluster_missing_locales
#80
thermokarst
closed
3 years ago
3
Add benchmarks
#79
ebolyen
closed
3 years ago
0
Allow sample-random to take a proportion to be randomly sampled
#78
Oddant1
opened
4 years ago
0
CI: build env file
#77
thermokarst
closed
3 years ago
0
move overridable configuration parameters from Snakefile to YAML file
#76
gregcaporaso
closed
3 years ago
1
allow user to define target size for subsampled collection of sequences
#75
gregcaporaso
opened
4 years ago
0
CI: Library updates
#74
thermokarst
closed
4 years ago
0
update install instructions in docs
#73
gregcaporaso
opened
4 years ago
0
IMP: generalize label-seqs
#72
gregcaporaso
closed
3 years ago
0
Add GitHub issue templates
#71
thermokarst
opened
4 years ago
0
running the tutorial yields a KeyError.
#70
ctb
closed
4 years ago
3
DOC: tutorial updates
#69
gregcaporaso
closed
3 years ago
3
add pangolin action for lineage assignment
#68
gregcaporaso
opened
4 years ago
0
illustrate alignment, masking, and tree building in tutorial
#67
gregcaporaso
closed
3 years ago
0
illustrate sampling of focal sequences in tutorial
#66
gregcaporaso
closed
3 years ago
0
MAINT: replaces VCFLikeMaskFormat with VCFMaskFormat
#65
gregcaporaso
closed
3 years ago
0
add documentation section on running in parallel
#64
gregcaporaso
closed
3 years ago
0
NEW: Root trees using an outgroup sample
#63
Oddant1
closed
3 years ago
1
BUG: fix MSA index using minting from seq ids
#62
ebolyen
closed
4 years ago
0
MAINT: mark label_unaligned_seqs as deprecated
#61
thermokarst
closed
4 years ago
0
ENH/DEP: add temporary action pending framework fix
#60
gregcaporaso
closed
4 years ago
2
BUG: fix newline handling
#59
ebolyen
closed
4 years ago
0
BUG: fix pseudo-vcf parsing
#58
ebolyen
closed
4 years ago
0
update mask format and parser
#57
gregcaporaso
closed
3 years ago
0
ENH: adds vcf-based alignment masking
#56
gregcaporaso
closed
4 years ago
0
add action to support vcf-based masking
#55
gregcaporaso
closed
4 years ago
0
IMP: Use Evans Fancy Open
#54
Oddant1
closed
4 years ago
0
Add MRCA to neighbor selection
#53
ebolyen
opened
4 years ago
0
IMP: Fill missing metadata values with given placeholder
#52
Oddant1
closed
4 years ago
0
generalize label_seqs input type
#51
gregcaporaso
closed
3 years ago
1
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