Closed nbokulich closed 7 years ago
Thanks @gregcaporaso ! I have pushed all requested changes (with the exception of code edits, as these are now moved to a new repo).
Thanks @gregcaporaso ! Have made that fix and pushed the changes.
Thanks @nbokulich, looks good!
@gregcaporaso would you mind reviewing?
Some big changes here — I generated two draft scripts,
autoannotate-taxonomy.py
andinventory-compiler.py
, which automatically generate the expected-taxonomy.tsv files, database-identifiers.tsv, and inventory.tsv.Then I did just that — all bacterial communities have new greengens and silva 97% and 99% OTU expected-taxonomy.tsv files and database-identifiers.tsv files. Others coming next.
This is a complete fix for #22 and #46 and a partial fix for #24
Probably need some clean up and
inventory-compiler.py
needs some work to automate whenever specific files are added (if it's possible — see notes).