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caporaso-lab / mockrobiota

A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
http://mockrobiota.caporasolab.us
BSD 3-Clause "New" or "Revised" License
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Added more explicit taxonomy information about expected sequences #60

Closed BenKaehler closed 7 years ago

BenKaehler commented 7 years ago

Added direct mapping from expected sequence descriptions to taxonomies where expected sequences exist (so for mock-12 through mock-17).

Created using mockrobiota-utilities.

Please check mappings.

nbokulich commented 7 years ago

Thanks @BenKaehler ! What do you think, @gregcaporaso ? This would be an additional file type to add to mockrobiota. @BenKaehler created these because the expected-sequences given to use by the contributors are not too useful for assessing taxonomic accuracy without full taxonomy mapping to a specific reference db. Another option is to put these in tax-credit if you think this is a specific application out of scope for mockrobiota.

BenKaehler commented 7 years ago

I've moved these files into short-read-tax-assignment.