Closed roey-angel closed 6 years ago
OK, I've made the suggested changes and pushed them to my repo. Do you see them on the branch? Comments:
MiSeq
sample-metadata.tsv , but the sequences given under 'source' are based on Sanger.I made all changes. I changed the name of the CART file from "classification" to "clusters" to clarify the idea. I'm not sure I understand your comment regarding CART. The tool (which is based on the database by Zehr's lab) only returns the phylogenetic cluster of the nifH sequence, not the taxonomic identity of the microbe. In most cases it is impossible to determine the specific taxonomic identity based on nifH sequence.
Hi @roey-angel - did you remember to push those changes to your feature branch? We aren't seeing them reflected in the pull request at the moment. Thanks!
hi @thermokarst, you should see them now
fixes #82