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caporaso-lab / sourcetracker2

SourceTracker2
BSD 3-Clause "New" or "Revised" License
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no such option: --per_sink_feature_assignments #101

Closed chloelulu closed 5 years ago

chloelulu commented 6 years ago

Hi,

I got the error when running sourcetracker2 gibbs -i otu_table.biom -m map.txt -o example7/ --per_sink_feature_assignments. I install the st2 based on the github mentioned conda install procedure. And sourcetracker2 --version sourcetracker2, version 2.0.1 May I know what is the reason? Thanks.

wdwvt1 commented 6 years ago

Hi Lu,

Unfortunately, the latest version of ST2 available on pip doesn't have the --per_sink_feature_assignments functionality. You can upgrade to the development version which does have that feature. To do that:

source activate st2 git clone https://github.com/biota/sourcetracker2.git cd sourcetracker2 python setup.py install

Then you should be able to use that option.

Best, Will

On Thu, Mar 29, 2018 at 4:45 PM, Lu Yang notifications@github.com wrote:

Hi,

I got the error when running sourcetracker2 gibbs -i otu_table.biom -m map.txt -o example7/ --per_sink_feature_assignments. I install the st2 based on the github mentioned conda install procedure. And sourcetracker2 --version sourcetracker2, version 2.0.1 May I know what is the reason? Thanks.

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