Would be nice to put in the default values for all the params. None are listed currently. Also, update doc / install instructions for use with Qiime AWS AMI specific.
Install Anaconda:
Run:
$ bash ~/Anaconda3-2.5.0-MacOSX-x86_64.sh
whereever you downloaded the Anaconda.sh file to
Create the Python 3 env
$conda create -n py3 python=3 numpy scipy h5py hdf5
Get SourceTracker2
$git clone https://github.com/biota/sourcetracker2.git
Make sure to put the SourceTracker2 directory in a user specific directory, rather than a root directory, or it’ll cause problems!
Install SourceTracker2
$python setup.py install
from inside sourcetracker2 directory
Installed successfully!
_Copied from original issue: biota/sourcetracker2internal#21
From @lkursell on February 22, 2016 22:50
Would be nice to put in the default values for all the params. None are listed currently. Also, update doc / install instructions for use with Qiime AWS AMI specific.
_Copied from original issue: biota/sourcetracker2internal#21