search

caporaso-lab / sourcetracker2

SourceTracker2
BSD 3-Clause "New" or "Revised" License
62 stars 45 forks source link

resolve different default parameters #48

Closed gregcaporaso closed 8 years ago

gregcaporaso commented 8 years ago

We have three sets of default parameters floating around. The CLI defaults for ST2, the CLI defaults for ST1, and another set that are introduced in the API documentation here (the "API doc defaults").

The "API doc defaults" are orders of magnitude faster. In our upcoming parameter evaluation, we should decide on which of these we want to use under which circumstances (e.g., is there a fast setting and a more accurate setting?), and more clearly document that. We should also review the findings presented in Henry et al as that is relevant here.

gregcaporaso commented 8 years ago

The API and the CLI now have the same default parameters (#71). Difference in docs is ok, as they're designed to run faster.