caravagnalab / CNAqc

CNAqc - Copy Number Alteration (CNA) Quality Check package
GNU General Public License v3.0
17 stars 8 forks source link

Failed to install 'BMix' from GitHub #6

Closed firatuyulur closed 3 years ago

firatuyulur commented 3 years ago

Hi,

When I try to install the package using devtools::install_github("caravagnalab/CNAqc") I get an error

Downloading GitHub repo caravagn/BMix@HEAD
Error: Failed to install 'CNAqc' from GitHub:
  Failed to install 'BMix' from GitHub:
  Missing commas separating Remotes: 'caravagn/pio
    caravagn/easypar'
9: (function () 
   {
       traceback(2)
       if (!interactive()) {
           print("Encountered an error")
           quit(save = "default", status = 1, runLast = FALSE)
       }
   })()
8: stop(remote_install_error(remotes[[i]], e))
7: value[[3L]](cond)
6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
4: tryCatch(res[[i]] <- install_remote(remotes[[i]], ...), error = function(e) {
       stop(remote_install_error(remotes[[i]], e))
   })
3: install_remotes(remotes, auth_token = auth_token, host = host, 
       dependencies = dependencies, upgrade = upgrade, force = force, 
       quiet = quiet, build = build, build_opts = build_opts, build_manual = build_manual, 
       build_vignettes = build_vignettes, repos = repos, type = type, 
       ...)
2: pkgbuild::with_build_tools({
       ellipsis::check_dots_used(action = getOption("devtools.ellipsis_action", 
           rlang::warn))
       {
           remotes <- lapply(repo, github_remote, ref = ref, subdir = subdir, 
               auth_token = auth_token, host = host)
           install_remotes(remotes, auth_token = auth_token, host = host, 
               dependencies = dependencies, upgrade = upgrade, force = force, 
               quiet = quiet, build = build, build_opts = build_opts, 
               build_manual = build_manual, build_vignettes = build_vignettes, 
               repos = repos, type = type, ...)
       }
   }, required = FALSE)
1: devtools::install_github("caravagnalab/CNAqc")

Do you have any suggestions?

Thanks Firat

caravagn commented 3 years ago

Thanks for the issue!

One of the last commits introduced a typo in BMix DESCRIPTION files, I lost a comma.

I fixed it now and so it should all install smoothly.