Closed mmfalco closed 1 year ago
Uhm that's fairly weird, can you provide a minimal dataset to reproduce the issue, I'll dig into it asap.
Sorry for the false alarm, it was late Friday and I clearly needed a break. It is just a warning, and the subclone callings comes in the next steps... However it would be nice to add an extra filtering step and filter genes with multiple mappings (such as "U1") in order to avoid that warning. Or perhaps changing the multiple = NULL
default argument in left_join
function.
@Militeee Thanks for your quick responses btw.
After running CONGAS on 1 of my samples I was not able to obtain the clusters I think due to the following warning:
After digging in the code apparently some genes appear in multiple chromosomes which makes this step crash:
For example in my case gene "U1" according to gene_locations object appears in :
So maybe it is necessary applying an extra filtering step.