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caravagnalab
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tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
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Variant Annotation
#9
Open
nicola-calonaci
opened
4 months ago
nicola-calonaci
commented
4 months ago
[x] Plug nf-core/vcf_annotate_ensemblvep subworkflow in correctly
[x] Add --SingleLetterAA flag as task.args (e.g.
https://github.com/nf-core/taxprofiler/blob/1.1.8/conf/modules.config
)
[ ] Run only if vcfs are not already annotated
[ ] check
ensemble_vep_download
module for running online
ensemble_vep_download
module for running online