TODO: Label GRASCCO

[aleneum]

Software

Labelstud.io

Label:

• Format: IO/Region

  | Prof. Dr. Ch. Janssen | (Behandelnder Arzt)
  | Prof. V. Ceusters J. Thiel | (Behandelnder Arzt)

• Labelgrundlage: https://static-content.springer.com/esm/art%3A10.1038%2Fs41597-023-02128-9/MediaObjects/41597_2023_2128_MOESM1_ESM.pdf

Labels 'Section' (Prio A)

• Abschluss
• Anamnese
• Anrede
• [ ] AufnahmeDiagnose
• [ ] AufnahmeMedikation
• [ ] Befunde
• EchoBefunde
• [ ] EntlassDiagnosen
• [ ] EntlassMedikation
• KuBBefunde (Körperlicher Untersuchungsbefund)
• Labor
• Mix
• [ ] RisikofaktorenAllergien
• [ ] Empfehlungen (Nicht Teil von CARDIO:DE)
• [ ] Zusammenfassung

Ergänzungen 'Context' (Prio A)

• [ ] AufnahmeDatum
• [ ] AufnahmeDauer
• [ ] BehandelnderArzt
• [ ] EntlassDatum
• [ ] Hausarzt
• [ ] Einrichtung
• [ ] Abteilung
• [ ] PatientName
• [ ] PatientGeburtsdatum

Labels 'Medication Information' (Prio B)

• Active Ingredient
• Dosage
• Drug
• Duration
• Form
• Frequency
• Reason
• Route
• Strength

Ressourcen

• https://medium.com/@justindavies/training-spacy-ner-models-with-doccano-8d8203e29bfa
• https://github.com/doccano/awesome-annotation-tools
• https://www.reddit.com/r/LanguageTechnology/comments/yrimfn/best_open_source_annotation_tool_for_nlp/
• https://dida.do/blog/the-best-free-labeling-tools-for-text-annotation-in-nlp
• https://learn.microsoft.com/en-us/azure/ai-services/language-service/custom-named-entity-recognition/concepts/data-formats
• https://towardsdatascience.com/extend-named-entity-recogniser-ner-to-label-new-entities-with-spacy-339ee5979044
• The impact of using different annotation schemes on named entity recognition

Traget Format: NER (TODO)

{
    'train': {
        'tokens': [
            ['@paulwalk', 'It', "'s", 'the', 'view', 'from', 'where', 'I', "'m", 'living', 'for', 'two', 'weeks', '.', 'Empire', 'State', 'Building', '=', 'ESB', '.', 'Pretty', 'bad', 'storm', 'here', 'last', 'evening', '.'],
            ['From', 'Green', 'Newsfeed', ':', 'AHFA', 'extends', 'deadline', 'for', 'Sage', 'Award', 'to', 'Nov', '.', '5', 'http://tinyurl.com/24agj38'], ...
        ],
        'tags': [
            [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 2, 2, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0],
            [0, 0, 0, 0, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ...
        ]
    },
    'validation': ...,
    'test': ...,
}

source: t-ner

[Depo14]

Have added our defined labels

[aleneum]

labeled everything we wanted (for now)