BioH4z
commented
1 year ago Dear mrescalona, we are sorry to answer you with such delay. It seems that you do not have permissions for the folder and the script fails. Unfortunately, this is a common problem for people using clusters. At the moment, we are not able to solve it. We let you know if there will be more updates. Thank you
Hello
Had aa few struggles to make the script run without errors in our server clusters.
Still, after submitting a job with the script it fails to finish.
log.txt has the following: DNA Pair-end mode Sample in running: HC0082 FASTQC before adapter trimming MULTIQC before adapter trimming Running cutadapt for adapter trimming Error: cannot create adapter trimmed file FASTQC after adapter trimming MULTIQC after adapter trimming Running bowtie2 for alignment on reference genome Error: cannot create bowtie2 file Running Shotgun Analysis Running kraken for bacteria Error: cannot create Kraken file Running kraken for viruses Error: cannot create Kraken file Running kraken for protozoa Error: cannot create Kraken file Running kaiju Error: cannot create kaiju file