Closed swinersha closed 2 years ago
Which version of rGEDI are you using? From CRAN or from github? CRAN version is old and still don't support version="002".
How to install rGEDI from github? When I try to run the code in the example on the readme page:
library(devtools) devtools::install_git("https://github.com/carlos-alberto-silva/rGEDI", dependencies = TRUE)
I get the error:Failed to install 'unknown package' from Git. What should i do?If you could take a look that would be much appreciated.
Similar problem here.
devtools::install_git("https://github.com/carlos-alberto-silva/rGEDI", dependencies = TRUE) starts running but exits with ERROR: package installation failed
Not sure if its a local problem though.
I got similar issue while installing rGEDI. Anyone able to solve it?
I have the same problem to installing rGEDI.
remotes::install_github('carlos-alberto-silva/rGEDI') Downloading GitHub repo carlos-alberto-silva/rGEDI@HEAD Error: Failed to install 'rGEDI' from GitHub: Git does not seem to be installed on your system.
I got similar issue while installing rGEDI. I ran
devtools::install_git("https://github.com/carlos-alberto-silva/rGEDI", dependencies = TRUE)
but I got error message,
error:Failed to install 'unknown package' from Git.
Though it is naive and patchy method, directly copying the latest gedifinder
function worked for me and I could download the HDF files of my interest.
gedifinder <- function(product,
ul_lat,
ul_lon,
lr_lat,
lr_lon,
version = "002",
daterange = NULL) {
concept_ids <- list(
GEDI01_B.001 = "C1656765475-LPDAAC_ECS",
GEDI02_A.001 = "C1656766463-LPDAAC_ECS",
GEDI02_B.001 = "C1656767133-LPDAAC_ECS",
GEDI01_B.002 = "C1908344278-LPDAAC_ECS",
GEDI02_A.002 = "C1908348134-LPDAAC_ECS",
GEDI02_B.002 = "C1908350066-LPDAAC_ECS"
)
page <- 1
bbox <- paste(ul_lon, lr_lat, lr_lon, ul_lat, sep = ",")
# Granules search url pattern
url_format <- paste0(
"https://cmr.earthdata.nasa.gov/search/granules.json?",
"pretty=true&provider=LPDAAC_ECS&page_size=2000&concept_id=%s",
"&bounding_box=%s"
)
request_url <- sprintf(
url_format,
concept_ids[paste0(product, ".", version)],
bbox
)
# Add temporal search if not null
if (!is.null(daterange)) {
url_format <- paste0(request_url, "&temporal=%s,%s")
request_url <- sprintf(url_format, daterange[1], daterange[2])
}
granules_href <- c()
# Append fetched granules to granules_href
# recursively, for each page (max 2000 per page)
repeat {
response <- curl::curl_fetch_memory(paste0(
request_url,
"&pageNum=",
page
))
content <- rawToChar(response$content)
result <- jsonlite::parse_json(content)
if (response$status_code != 200) {
stop(paste("\n", result$errors, collapse = "\n"))
}
granules <- result$feed$entry
if (length(granules) == 0) break
granules_href <- c(
granules_href,
sapply(granules, function(x) x$links[[1]]$href)
)
page <- page + 1
}
return(granules_href)
}
I am not sure if using the old version results in other issues but so far so good for my project.
For those with "error: Failed to install 'unknown package' from Git." It says: "Git does not seem to be installed on your system.", so you need to download and install Git from https://git-scm.com/
Thanks @Rapsodia86
When I try to run the code in the example on the readme page:
gLevel1B<-gedifinder(product="GEDI01_B",ul_lat, ul_lon, lr_lat, lr_lon,version="002",daterange=daterange)
I get the error: Error in readLines(response) : HTTP error 400. I'm guessing their is a bad URL somewhere. If you could take a look that would be much appreciated.
My system specs are: R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit)