Expected running time for first example dataset MM1? Current ~8 hours and still running.

carlosproca / autospill

R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data

Other

18 stars 10 forks source link

Expected running time for first example dataset MM1? Current ~8 hours and still running. #3

Closed pcm32 closed 3 years ago

pcm32 commented 3 years ago

Hi there!

I tried running the first dataset example with the calculate_compensation_paper.r script on a 2.5 GHz Dual core Intel Core i7. I see 4 R threads running for ~8 hours now (and is not done yet). Is that expected running time or I should be looking into something else in detail as this is too long for the MM1 dataset?

Thanks!

carlosproca commented 3 years ago

(Dealt with by email)