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carlson-lab / lpne-data-analysis

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Too many unusable points in preprocessData>averageAreas #2

Closed jackgoffinet closed 3 years ago

jackgoffinet commented 3 years ago

I tried to run the pipeline with default parameters using runFeaturePipeline('saveFile.mat') and it stopped with an error in preprocessData>averageAreas:

Error using preprocessData>averageAreas (line 275) Won't work, too many unusable points in DLS, stopping

I've got two questions about this:

1) It looks like this means there's too much saturation in this channel. Should I exclude all the DLS channels somehow? 2) The DLS channels were already marked 0 in CHANACTIVE, so is there another way to exclude the DLS channels?

Thanks!

jackgoffinet commented 3 years ago

Workaround added in #4 , merged into master.