make.reference function reports error

carmonalab / ProjecTILs

Interpretation of cell states using reference single-cell maps

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make.reference function reports error #67

Closed LiHangzls closed 8 months ago

LiHangzls commented 1 year ago

In R version 4.2.3 (2023-03-15), an error occurs when running the code ref <- make.reference(ref = ref.data, ndim = 10, recalculate.umap = TRUE, annotation.column = "anno") Error in svd(x, nu = 0, nv = k) : a dimension is zero

mass-a commented 12 months ago

Hello, it would be helpful to know what is your input dataset. Would you be able to share it, in order for us to reproduce your error?