carmonalab / ProjecTILs

Interpretation of cell states using reference single-cell maps
GNU General Public License v3.0
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problem in installation project TILS #78

Closed rezath17 closed 4 months ago

rezath17 commented 7 months ago

Hi I tried to install project TILS, but I faced an error message, anyone have idea about the possible reason? `

remotes::install_github("carmonalab/ProjecTILs") Downloading GitHub repo carmonalab/ProjecTILs@HEAD Skipping 15 packages ahead of CRAN: zlibbioc, XVector, GenomeInfoDbData, S4Arrays, GenomeInfoDb, IRanges, Biobase, MatrixGenerics, DelayedArray, GenomicRanges, BiocGenerics, S4Vectors, SummarizedExperiment, SingleCellExperiment, BiocParallel ── R CMD build ────────────────────────────────────────────────────────────────────────────────────────────────── ✔ checking for file 'C:\Users\ralimohammadi\AppData\Local\Temp\Rtmp4cOHPr\remotes4e3c212a1fab\carmonalab-ProjecTILs-4d73208/DESCRIPTION' (769ms) ─ preparing 'ProjecTILs': ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building 'ProjecTILs_3.3.1.tar.gz'

rezath17 commented 7 months ago

Solved by installing DESeq2 package! ` BiocManager::install("DESeq2")

`

mass-a commented 7 months ago

Hi, from the error message:

namespace 'UCell' 2.4.0 is being loaded, but >= 2.6.0 is required

You need to update your version of UCell to 2.6.0 or higher. DESeq2 is not required by ProjecTILs, but perhaps by updating it you also updated UCell?