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carmonalab / ProjecTILs

Interpretation of cell states using reference single-cell maps
GNU General Public License v3.0
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Error while loading the refernce mouse TIL dataset #79

Closed itamuria closed 5 months ago

itamuria commented 5 months ago

After running load reference

ref <- ProjecTILs::load.reference.map()

I have the next error:

Error in value[3L] : Reference object C:/ref_TILAtlas_mouse_v1.rds is invalid

mass-a commented 5 months ago

Hello, almost certainly it's a problem with the download of the reference map. Try removing the file "ref_TILAtlas_mouse_v1.rds", then set options(timeout = 3000) and download the reference object again. Alternatively, you can download it manually from figshare:12478571.

Best -m

itamuria commented 5 months ago

Hello, Yes, it worked. Thanks, all the best