Radar doesn't show signatures

carmonalab / ProjecTILs

Interpretation of cell states using reference single-cell maps

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Radar doesn't show signatures #84

Open itamuria opened 6 months ago

itamuria commented 6 months ago

Hello,

When I plot radars I can see gene expressions but when I try to plot signatures, I don't see them. Why could it be?

plot.states.radar(ref, query = query.projected, genes4radar = programs$cellCycle.G1S, min.cells = 5, query.assay="originalexp")

plot.states.radar(ref, query = query.projected, meta4radar = names(programs), query.assay="originalexp")

Thanks i

mass-a commented 6 months ago

Hello, I assume you calculated the signature scores both for the reference and for the query? can you confirm the scores are available (and non-zero) in the metadata for both objects?