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carmonalab
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STACAS
R package for semi-supervised single-cell data integration
GNU General Public License v3.0
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implement option for automatic sketching of input datasets
#32
sjcarmona
opened
9 months ago
0
CheckGC() not imported from SeuratObject
#31
gdagstn
closed
9 months ago
1
working with Seurat v5 layers?
#30
dpearton
opened
11 months ago
3
Error in StandardizeGeneSymbols()
#29
zlin-bioinfo
closed
9 months ago
1
Run.STACAS Error in GetAssayData
#28
gianfilippo
closed
1 year ago
1
Discrepancy in genes included in block list between Human and Mouse
#27
JGarnica22
opened
1 year ago
0
Finding markers after integration
#26
vercanie
closed
1 year ago
2
Dataset not integrating when increasing features.
#25
kasumaz
closed
1 year ago
4
Error while finding anchors with semi supervised approach
#24
daymecita
closed
1 year ago
4
new.assay.name in Run.STACAS
#23
leonardHerault
closed
1 year ago
1
Error when running STACAS on spatial data
#22
kokonech
closed
1 year ago
6
Preparing PCA embeddings for objects... 1/5 2/5 3/5 4/5 5/5 Finding integration anchors... Error in Embeddings(object = object.list[[x]][[nn.reduction]])[, dims] : subscript out of bounds
#21
AlonsoOga
closed
9 months ago
1
How to tune the STACAS guide tree
#20
lucygarner
closed
1 year ago
1
IntegrateData.STACAS function not found
#19
lucygarner
closed
2 years ago
1
Deletion of FilterAnchors.STACAS
#18
hiuchi
closed
2 years ago
2
Add support for SCT normalization
#17
deevdevil88
closed
9 months ago
7
option to only use intersection of features between datasets
#16
sjcarmona
closed
1 year ago
0
Process bar?
#15
MingwuDuan
closed
2 years ago
2
file and link not accessible
#14
MingwuDuan
closed
2 years ago
1
package installation suddenly stopped working
#13
alexthiery
closed
2 years ago
1
Error in idx[i, ] <- res[[i]][[1]] : number of items to replace is not a multiple of replacement length
#12
reberya
closed
3 years ago
2
Interpreting plot of distance distribution between the anchors
#11
reberya
closed
3 years ago
2
Errors with small datasets
#10
LauRich05
closed
3 years ago
1
Integrating using STACAS and Seurat
#9
msalaciak
closed
3 years ago
2
Cholmod error 'problem too large'
#8
LauRich05
closed
3 years ago
1
FindAnchors.STACAS ignoring the "reference" list
#7
aminzia
closed
3 years ago
0
Can I run STACAS on Seurat 4?
#6
jig4003
closed
3 years ago
1
seurat v3
#5
alexthiery
closed
3 years ago
1
error in FindAnchors.STACAS
#4
JavieraVillar
closed
3 years ago
4
Integration error (due to small number of cells?)
#3
kvittingseerup
closed
3 years ago
6
Seurat Normalization
#2
kvittingseerup
closed
3 years ago
4
R v4.0 / Seurat v3.2.1
#1
jdime
closed
4 years ago
5