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carnegie / E2P2

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How to generate the latest database？ #15

Open zhangwenda0518 opened 12 months ago

zhangwenda0518 commented 12 months ago

I installed it according to the instructions, and it worked successfully. However, when I made an entry query, many changes occurred in MetaCyc. such as image

I downloaded rpsd-4.2-20190307 from https://ftp.dpb.carnegiescience.edu/rpsd/ image I saw this explanation. Can you elaborate on it? Where should I get these latest documents?And I would like to ask how to generate the latest data set.

thanks ！

bxuecarnegie commented 12 months ago

We are currently in the process of updating RPSD. In the meantime however, unfortunately you'll might need to manually start checking EC numbers that are transfered due to metacyc and EC numbers being updated. One way to do so is download the file from Expasy (https://ftp.expasy.org/databases/enzyme/enzyme.dat) and parse the file.

zhangwenda0518 commented 12 months ago

Thank you for your quick reply and look forward to the arrival of the latest version.