search

carnisj / bcdi

BCDI: tools for pre(post)-processing Bragg coherent X-ray diffraction imaging data
Other
23 stars 17 forks source link

[BUG] Installing bcdi on p9 #240

Closed DSimonne closed 2 years ago

DSimonne commented 2 years ago

Describe the bug New error when installing bcdi

To Reproduce Install bcdi on p9

Python (please complete the following information): slurm, py3.9

p9-03:david/Packages/bcdi % pip install .
Processing /gpfs/easy/data/id01/inhouse/david/Packages/bcdi
  Preparing metadata (setup.py) ... done
Requirement already satisfied: numpy in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (1.21.2)
Requirement already satisfied: scipy in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (1.7.1)
Requirement already satisfied: scikit-image<=0.18.3 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (0.18.3)
Requirement already satisfied: matplotlib in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (3.4.3)
Requirement already satisfied: hdf5plugin in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (3.1.1)
Requirement already satisfied: h5py in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (3.6.0)
Requirement already satisfied: traits in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (6.2.0)
Requirement already satisfied: vtk in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (9.0.1)
Requirement already satisfied: importlib_resources in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (5.2.2)
Requirement already satisfied: xrayutilities in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (1.7.1)
Requirement already satisfied: fabio in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (0.12.0)
Requirement already satisfied: silx in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (0.15.2)
Requirement already satisfied: pyyaml in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (5.4.1)
Requirement already satisfied: tables in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (3.6.1)
Requirement already satisfied: lmfit in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (1.0.2)
Requirement already satisfied: moviepy in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (1.0.3)
Requirement already satisfied: pillow in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (8.3.2)
Requirement already satisfied: pandas in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (1.3.2)
Requirement already satisfied: pyqt5 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (5.15.4)
Requirement already satisfied: ipywidgets in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bcdi==0.2.4) (7.6.4)
Requirement already satisfied: tifffile>=2019.7.26 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from scikit-image<=0.18.3->bcdi==0.2.4) (2021.8.30)
Requirement already satisfied: PyWavelets>=1.1.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from scikit-image<=0.18.3->bcdi==0.2.4) (1.1.1)
Requirement already satisfied: networkx>=2.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from scikit-image<=0.18.3->bcdi==0.2.4) (2.6.2)
Requirement already satisfied: imageio>=2.3.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from scikit-image<=0.18.3->bcdi==0.2.4) (2.9.0)
Requirement already satisfied: cycler>=0.10 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from matplotlib->bcdi==0.2.4) (0.10.0)
Requirement already satisfied: pyparsing>=2.2.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from matplotlib->bcdi==0.2.4) (2.4.7)
Requirement already satisfied: python-dateutil>=2.7 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from matplotlib->bcdi==0.2.4) (2.8.2)
Requirement already satisfied: kiwisolver>=1.0.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from matplotlib->bcdi==0.2.4) (1.3.2)
Requirement already satisfied: setuptools in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from fabio->bcdi==0.2.4) (58.1.0)
Requirement already satisfied: zipp>=3.1.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from importlib_resources->bcdi==0.2.4) (3.5.0)
Requirement already satisfied: ipython-genutils~=0.2.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipywidgets->bcdi==0.2.4) (0.2.0)
Requirement already satisfied: nbformat>=4.2.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipywidgets->bcdi==0.2.4) (5.1.3)
Requirement already satisfied: jupyterlab-widgets>=1.0.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipywidgets->bcdi==0.2.4) (1.0.1)
Requirement already satisfied: widgetsnbextension~=3.5.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipywidgets->bcdi==0.2.4) (3.5.1)
Requirement already satisfied: ipykernel>=4.5.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipywidgets->bcdi==0.2.4) (6.3.1)
Requirement already satisfied: ipython>=4.0.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipywidgets->bcdi==0.2.4) (7.27.0)
Requirement already satisfied: traitlets>=4.3.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipywidgets->bcdi==0.2.4) (5.1.0)
Requirement already satisfied: uncertainties>=3.0.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from lmfit->bcdi==0.2.4) (3.1.6)
Requirement already satisfied: asteval>=0.9.16 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from lmfit->bcdi==0.2.4) (0.9.25)
Requirement already satisfied: requests<3.0,>=2.8.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from moviepy->bcdi==0.2.4) (2.26.0)
Requirement already satisfied: proglog<=1.0.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from moviepy->bcdi==0.2.4) (0.1.9)
Requirement already satisfied: decorator<5.0,>=4.0.2 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from moviepy->bcdi==0.2.4) (4.4.2)
Requirement already satisfied: tqdm<5.0,>=4.11.2 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from moviepy->bcdi==0.2.4) (4.62.2)
Requirement already satisfied: imageio-ffmpeg>=0.2.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from moviepy->bcdi==0.2.4) (0.4.5)
Requirement already satisfied: pytz>=2017.3 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from pandas->bcdi==0.2.4) (2021.1)
Requirement already satisfied: PyQt5-sip<13,>=12.8 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from pyqt5->bcdi==0.2.4) (12.9.0)
Requirement already satisfied: six in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from silx->bcdi==0.2.4) (1.16.0)
Requirement already satisfied: numexpr>=2.6.2 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from tables->bcdi==0.2.4) (2.7.3)
Requirement already satisfied: matplotlib-inline<0.2.0,>=0.1.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipykernel>=4.5.1->ipywidgets->bcdi==0.2.4) (0.1.2)
Requirement already satisfied: debugpy<2.0,>=1.0.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipykernel>=4.5.1->ipywidgets->bcdi==0.2.4) (1.4.1)
Requirement already satisfied: tornado<7.0,>=4.2 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipykernel>=4.5.1->ipywidgets->bcdi==0.2.4) (6.1)
Requirement already satisfied: jupyter-client<8.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipykernel>=4.5.1->ipywidgets->bcdi==0.2.4) (7.0.2)
Requirement already satisfied: backcall in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (0.2.0)
Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (3.0.20)
Requirement already satisfied: pygments in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (2.10.0)
Requirement already satisfied: jedi>=0.16 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (0.18.0)
Requirement already satisfied: pickleshare in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (0.7.5)
Requirement already satisfied: pexpect>4.3 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (4.8.0)
Requirement already satisfied: jupyter-core in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbformat>=4.2.0->ipywidgets->bcdi==0.2.4) (4.7.1)
Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbformat>=4.2.0->ipywidgets->bcdi==0.2.4) (3.2.0)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from requests<3.0,>=2.8.1->moviepy->bcdi==0.2.4) (1.26.6)
Requirement already satisfied: charset-normalizer~=2.0.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from requests<3.0,>=2.8.1->moviepy->bcdi==0.2.4) (2.0.4)
Requirement already satisfied: idna<4,>=2.5 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from requests<3.0,>=2.8.1->moviepy->bcdi==0.2.4) (3.2)
Requirement already satisfied: certifi>=2017.4.17 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from requests<3.0,>=2.8.1->moviepy->bcdi==0.2.4) (2021.5.30)
Requirement already satisfied: future in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from uncertainties>=3.0.1->lmfit->bcdi==0.2.4) (0.18.2)
Requirement already satisfied: notebook>=4.4.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (6.4.3)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from jedi>=0.16->ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (0.8.2)
Requirement already satisfied: pyrsistent>=0.14.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets->bcdi==0.2.4) (0.18.0)
Requirement already satisfied: attrs>=17.4.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets->bcdi==0.2.4) (21.2.0)
Requirement already satisfied: entrypoints in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from jupyter-client<8.0->ipykernel>=4.5.1->ipywidgets->bcdi==0.2.4) (0.3)
Requirement already satisfied: nest-asyncio>=1.5 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from jupyter-client<8.0->ipykernel>=4.5.1->ipywidgets->bcdi==0.2.4) (1.5.1)
Requirement already satisfied: pyzmq>=13 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from jupyter-client<8.0->ipykernel>=4.5.1->ipywidgets->bcdi==0.2.4) (22.2.1)
Requirement already satisfied: Send2Trash>=1.5.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (1.8.0)
Requirement already satisfied: argon2-cffi in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (21.1.0)
Requirement already satisfied: prometheus-client in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.11.0)
Requirement already satisfied: nbconvert in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (6.1.0)
Requirement already satisfied: jinja2 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (3.0.1)
Requirement already satisfied: terminado>=0.8.3 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.11.1)
Requirement already satisfied: ptyprocess>=0.5 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from pexpect>4.3->ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (0.7.0)
Requirement already satisfied: wcwidth in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython>=4.0.0->ipywidgets->bcdi==0.2.4) (0.2.5)
Requirement already satisfied: cffi>=1.0.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (1.14.6)
Requirement already satisfied: MarkupSafe>=2.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from jinja2->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (2.0.1)
Requirement already satisfied: jupyterlab-pygments in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.1.2)
Requirement already satisfied: mistune<2,>=0.8.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.8.4)
Requirement already satisfied: testpath in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.5.0)
Requirement already satisfied: defusedxml in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.7.1)
Requirement already satisfied: nbclient<0.6.0,>=0.5.0 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.5.4)
Requirement already satisfied: pandocfilters>=1.4.1 in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (1.4.3)
Requirement already satisfied: bleach in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (4.1.0)
Requirement already satisfied: pycparser in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from cffi>=1.0.0->argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (2.20)
Requirement already satisfied: packaging in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (21.0)
Requirement already satisfied: webencodings in /gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets->bcdi==0.2.4) (0.5.1)
Building wheels for collected packages: bcdi
  Building wheel for bcdi (setup.py) ... error
  error: subprocess-exited-with-error

  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> [400 lines of output]
      running bdist_wheel
      running build
      running build_py
      running egg_info
      writing bcdi.egg-info/PKG-INFO
      /data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages/setuptools/dist.py:151: UserWarning: newlines not allowed and will break in the future
        warnings.warn("newlines not allowed and will break in the future")
      writing dependency_links to bcdi.egg-info/dependency_links.txt
      writing requirements to bcdi.egg-info/requires.txt
      writing top-level names to bcdi.egg-info/top_level.txt
      reading manifest file 'bcdi.egg-info/SOURCES.txt'
      reading manifest template 'MANIFEST.in'
      adding license file 'LICENSE.txt'
      writing manifest file 'bcdi.egg-info/SOURCES.txt'
      running build_scripts
      copying and adjusting scripts/algorithms/bcdi_flatten_intensity.py -> build/scripts-3.8
      copying and adjusting scripts/algorithms/bcdi_blurring_function.py -> build/scripts-3.8
      copying and adjusting scripts/experiment/bcdi_ccd_calib.py -> build/scripts-3.8
      copying and adjusting scripts/experiment/bcdi_ccd_calib_cristal.py -> build/scripts-3.8
      copying and adjusting scripts/experiment/bcdi_ccd_calib_sixs.py -> build/scripts-3.8
      copying and adjusting scripts/graph/bcdi_3D_object_movie.py -> build/scripts-3.8
      copying and adjusting scripts/graph/bcdi_linecut_diffpattern.py -> build/scripts-3.8
      copying and adjusting scripts/graph/bcdi_scan_analysis.py -> build/scripts-3.8
      copying and adjusting scripts/graph/bcdi_scan_movie.py -> build/scripts-3.8
      copying and adjusting scripts/graph/bcdi_view_mesh.py -> build/scripts-3.8
      copying and adjusting scripts/graph/bcdi_view_psf.py -> build/scripts-3.8
      copying and adjusting scripts/graph/bcdi_visu_2D_slice.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_amp_histogram.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_angular_profile.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_bulk_surface_strain.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_compare_BCDI_SEM.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_correct_angles_detector.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_facet_strain.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_line_profile.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_modes_decomposition.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_polarplot.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_post_process_BCDI_2D.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_prtf_BCDI.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_prtf_BCDI_2D.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_prtf_CDI.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_rocking_curves.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_strain.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_strain_mean_var_rms.py -> build/scripts-3.8
      copying and adjusting scripts/postprocessing/bcdi_volume_phasing.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_apodize.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_concatenate_scans.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_interpolate_CDI.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_preprocess_BCDI.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_preprocess_CDI.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_read_BCDI_scan.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_read_edf.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_read_data_P10.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_rescale_support.py -> build/scripts-3.8
      copying and adjusting scripts/preprocessing/bcdi_rotate_scan.py -> build/scripts-3.8
      copying and adjusting scripts/publication/bcdi_coefficient_variation.py -> build/scripts-3.8
      copying and adjusting scripts/publication/bcdi_compa_simu_exp.py -> build/scripts-3.8
      copying and adjusting scripts/publication/bcdi_diffpattern_from_reconstruction.py -> build/scripts-3.8
      copying and adjusting scripts/publication/bcdi_plot_diffpattern_2D.py -> build/scripts-3.8
      copying and adjusting scripts/publication/bcdi_plot_strain.py -> build/scripts-3.8
      copying and adjusting scripts/simulation/bcdi_diffraction_angles.py -> build/scripts-3.8
      copying and adjusting scripts/simulation/bcdi_domain_orientation.py -> build/scripts-3.8
      copying and adjusting scripts/simulation/bcdi_kinematic_sum_forloop.py -> build/scripts-3.8
      copying and adjusting scripts/simulation/bcdi_plane_angle.py -> build/scripts-3.8
      copying and adjusting scripts/simulation/bcdi_simu_diffpattern_BCDI.py -> build/scripts-3.8
      copying and adjusting scripts/simulation/bcdi_simu_diffpattern_CDI.py -> build/scripts-3.8
      copying and adjusting scripts/simulation/bcdi_simu_signe_phase.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_apodize.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_angular_avg_3Dto1D.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_calibration_grid_SEM.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_center_of_rotation.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_correlation_realspace.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_crop_npz.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_cross_corr_fast_live.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_fit_1D_curve.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_fit_1D_background.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_parse_fio2spec.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_primes.py -> build/scripts-3.8
      copying and adjusting scripts/utils/bcdi_save_to_mat.py -> build/scripts-3.8
      copying and adjusting scripts/xcca/bcdi_view_ccf.py -> build/scripts-3.8
      copying and adjusting scripts/xcca/bcdi_view_ccf_map.py -> build/scripts-3.8
      copying and adjusting scripts/xcca/bcdi_xcca_3D_map_polar.py -> build/scripts-3.8
      copying and adjusting scripts/xcca/bcdi_xcca_3D_map_rect.py -> build/scripts-3.8
      copying and adjusting scripts/xcca/bcdi_xcca_3D_polar.py -> build/scripts-3.8
      copying and adjusting scripts/xcca/bcdi_xcca_3D_rect.py -> build/scripts-3.8
      installing to build/bdist.linux-ppc64le/wheel
      running install
      running install_lib
      copying build/lib/bcdi/preprocessing/alias_dict_2019.txt -> build/bdist.linux-ppc64le/wheel/bcdi/preprocessing
      copying build/lib/bcdi/preprocessing/__init__.py -> build/bdist.linux-ppc64le/wheel/bcdi/preprocessing
      copying build/lib/bcdi/preprocessing/cdi_utils.py -> build/bdist.linux-ppc64le/wheel/bcdi/preprocessing
      copying build/lib/bcdi/preprocessing/preprocessing_runner.py -> build/bdist.linux-ppc64le/wheel/bcdi/preprocessing
      copying build/lib/bcdi/preprocessing/alias_dict_2018.txt -> build/bdist.linux-ppc64le/wheel/bcdi/preprocessing
      creating build/bdist.linux-ppc64le/wheel/bcdi/simulation
      copying build/lib/bcdi/simulation/simulation_utils.py -> build/bdist.linux-ppc64le/wheel/bcdi/simulation
      copying build/lib/bcdi/__init__.py -> build/bdist.linux-ppc64le/wheel/bcdi
      creating build/bdist.linux-ppc64le/wheel/bcdi/utils
      copying build/lib/bcdi/utils/parameters.py -> build/bdist.linux-ppc64le/wheel/bcdi/utils
      copying build/lib/bcdi/utils/parser.py -> build/bdist.linux-ppc64le/wheel/bcdi/utils
      copying build/lib/bcdi/utils/validation.py -> build/bdist.linux-ppc64le/wheel/bcdi/utils
      copying build/lib/bcdi/utils/__init__.py -> build/bdist.linux-ppc64le/wheel/bcdi/utils
      copying build/lib/bcdi/utils/io_helper.py -> build/bdist.linux-ppc64le/wheel/bcdi/utils
      copying build/lib/bcdi/xcca/__init__.py -> build/bdist.linux-ppc64le/wheel/bcdi/xcca
      creating build/bdist.linux-ppc64le/wheel/bcdi/examples
      copying build/lib/bcdi/examples/S11_modes.h5 -> build/bdist.linux-ppc64le/wheel/bcdi/examples
      copying build/lib/bcdi/examples/config_preprocessing.yml -> build/bdist.linux-ppc64le/wheel/bcdi/examples
      copying build/lib/bcdi/examples/S11_config_preprocessing.yml -> build/bdist.linux-ppc64le/wheel/bcdi/examples
      copying build/lib/bcdi/examples/__init__.py -> build/bdist.linux-ppc64le/wheel/bcdi/examples
      copying build/lib/bcdi/examples/S11_modes_252_210_200_prebinning_1_2_2.h5 -> build/bdist.linux-ppc64le/wheel/bcdi/examples
      creating build/bdist.linux-ppc64le/wheel/bcdi/algorithms
      copying build/lib/bcdi/algorithms/__init__.py -> build/bdist.linux-ppc64le/wheel/bcdi/algorithms
      copying build/lib/bcdi/algorithms/algorithms_utils.py -> build/bdist.linux-ppc64le/wheel/bcdi/algorithms
      running install_egg_info
      Copying bcdi.egg-info to build/bdist.linux-ppc64le/wheel/bcdi-0.2.4-py3.8.egg-info
      running install_scripts
      creating build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data
      creating build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_xcca_3D_map_polar.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_ccd_calib_cristal.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_view_psf.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_line_profile.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_xcca_3D_rect.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_xcca_3D_map_rect.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_center_of_rotation.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_rescale_support.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_concatenate_scans.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_angular_profile.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_prtf_CDI.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_view_mesh.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_read_edf.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_simu_diffpattern_CDI.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_simu_signe_phase.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_volume_phasing.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_fit_1D_background.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_read_BCDI_scan.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_strain.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_linecut_diffpattern.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_modes_decomposition.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_polarplot.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_coefficient_variation.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_save_to_mat.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_kinematic_sum_forloop.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_rocking_curves.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_post_process_BCDI_2D.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_plot_diffpattern_2D.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_cross_corr_fast_live.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_view_ccf.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_strain_mean_var_rms.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_diffraction_angles.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_facet_strain.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_compare_BCDI_SEM.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_diffpattern_from_reconstruction.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_amp_histogram.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_scan_analysis.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_primes.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_preprocess_BCDI.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_calibration_grid_SEM.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_parse_fio2spec.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_angular_avg_3Dto1D.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_prtf_BCDI.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_read_data_P10.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_plane_angle.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_apodize.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_prtf_BCDI_2D.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_preprocess_CDI.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_rotate_scan.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_correlation_realspace.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_blurring_function.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_fit_1D_curve.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_crop_npz.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_compa_simu_exp.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_scan_movie.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_view_ccf_map.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      copying build/scripts-3.8/bcdi_ccd_calib.py -> build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_xcca_3D_map_polar.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_ccd_calib_cristal.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_view_psf.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_line_profile.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_xcca_3D_rect.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_xcca_3D_map_rect.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_center_of_rotation.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_rescale_support.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_concatenate_scans.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_angular_profile.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_prtf_CDI.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_interpolate_CDI.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_bulk_surface_strain.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_correct_angles_detector.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_view_mesh.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_plot_strain.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_visu_2D_slice.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_xcca_3D_polar.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_read_edf.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_simu_diffpattern_CDI.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_simu_signe_phase.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_volume_phasing.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_domain_orientation.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_flatten_intensity.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_3D_object_movie.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_simu_diffpattern_BCDI.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_fit_1D_background.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_ccd_calib_sixs.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_read_BCDI_scan.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_strain.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_linecut_diffpattern.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_modes_decomposition.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_polarplot.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_coefficient_variation.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_save_to_mat.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_kinematic_sum_forloop.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_rocking_curves.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_post_process_BCDI_2D.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_plot_diffpattern_2D.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_cross_corr_fast_live.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_view_ccf.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_strain_mean_var_rms.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_diffraction_angles.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_facet_strain.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_compare_BCDI_SEM.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_diffpattern_from_reconstruction.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_amp_histogram.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_scan_analysis.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_primes.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_preprocess_BCDI.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_calibration_grid_SEM.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_parse_fio2spec.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_angular_avg_3Dto1D.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_prtf_BCDI.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_read_data_P10.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_plane_angle.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_apodize.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_prtf_BCDI_2D.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_preprocess_CDI.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_rotate_scan.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_correlation_realspace.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_blurring_function.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_fit_1D_curve.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_crop_npz.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_compa_simu_exp.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_scan_movie.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_view_ccf_map.py to 755
      changing mode of build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.data/scripts/bcdi_ccd_calib.py to 755
      adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
      creating build/bdist.linux-ppc64le/wheel/bcdi-0.2.4.dist-info/WHEEL
      creating '/tmp/pip-wheel-ss7iy5ut/bcdi-0.2.4-py3-none-any.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it
      adding 'bcdi/__init__.py'
      adding 'bcdi/algorithms/__init__.py'
      adding 'bcdi/algorithms/algorithms_utils.py'
      adding 'bcdi/examples/S11_config_postprocessing.yml'
      adding 'bcdi/examples/S11_config_preprocessing.yml'
      adding 'bcdi/examples/S11_modes.h5'
      adding 'bcdi/examples/S11_modes_252_210_200_prebinning_1_2_2.h5'
      adding 'bcdi/examples/S11_modes_252_420_392_prebinning_1_1_1.h5'
      adding 'bcdi/examples/__init__.py'
      adding 'bcdi/examples/config_postprocessing.yml'
      adding 'bcdi/examples/config_preprocessing.yml'
      adding 'bcdi/experiment/__init__.py'
      adding 'bcdi/experiment/beamline.py'
      adding 'bcdi/experiment/detector.py'
      adding 'bcdi/experiment/diffractometer.py'
      adding 'bcdi/experiment/loader.py'
      adding 'bcdi/experiment/rotation_matrix.py'
      adding 'bcdi/experiment/setup.py'
      adding 'bcdi/graph/__init__.py'
      adding 'bcdi/graph/graph_utils.py'
      adding 'bcdi/postprocessing/__init__.py'
      adding 'bcdi/postprocessing/facet_analysis.py'
      adding 'bcdi/postprocessing/facet_recognition.py'
      adding 'bcdi/postprocessing/postprocessing_runner.py'
      adding 'bcdi/postprocessing/postprocessing_utils.py'
      adding 'bcdi/preprocessing/ReadNxs3.py'
      adding 'bcdi/preprocessing/__init__.py'
      adding 'bcdi/preprocessing/alias_dict_2018.txt'
      adding 'bcdi/preprocessing/alias_dict_2019.txt'
      adding 'bcdi/preprocessing/alias_dict_2020.txt'
      adding 'bcdi/preprocessing/alias_dict_2021.txt'
      adding 'bcdi/preprocessing/bcdi_utils.py'
      adding 'bcdi/preprocessing/cdi_utils.py'
      adding 'bcdi/preprocessing/nxsReady.py'
      adding 'bcdi/preprocessing/preprocessing_runner.py'
      adding 'bcdi/simulation/__init__.py'
      adding 'bcdi/simulation/simulation_utils.py'
      adding 'bcdi/simulation/supportMaker.py'
      adding 'bcdi/utils/__init__.py'
      adding 'bcdi/utils/image_registration.py'
      adding 'bcdi/utils/io_helper.py'
      adding 'bcdi/utils/parameters.py'
      adding 'bcdi/utils/parser.py'
      adding 'bcdi/utils/utilities.py'
      adding 'bcdi/utils/validation.py'
      adding 'bcdi/xcca/__init__.py'
      adding 'bcdi/xcca/xcca_utils.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_3D_object_movie.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_amp_histogram.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_angular_avg_3Dto1D.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_angular_profile.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_apodize.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_blurring_function.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_bulk_surface_strain.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_calibration_grid_SEM.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_ccd_calib.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_ccd_calib_cristal.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_ccd_calib_sixs.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_center_of_rotation.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_coefficient_variation.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_compa_simu_exp.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_compare_BCDI_SEM.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_concatenate_scans.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_correct_angles_detector.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_correlation_realspace.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_crop_npz.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_cross_corr_fast_live.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_diffpattern_from_reconstruction.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_diffraction_angles.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_domain_orientation.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_facet_strain.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_fit_1D_background.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_fit_1D_curve.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_flatten_intensity.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_interpolate_CDI.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_kinematic_sum_forloop.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_line_profile.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_linecut_diffpattern.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_modes_decomposition.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_parse_fio2spec.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_plane_angle.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_plot_diffpattern_2D.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_plot_strain.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_polarplot.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_post_process_BCDI_2D.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_preprocess_BCDI.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_preprocess_CDI.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_primes.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_prtf_BCDI.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_prtf_BCDI_2D.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_prtf_CDI.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_read_BCDI_scan.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_read_data_P10.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_read_edf.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_rescale_support.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_rocking_curves.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_rotate_scan.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_save_to_mat.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_scan_analysis.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_scan_movie.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_simu_diffpattern_BCDI.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_simu_diffpattern_CDI.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_simu_signe_phase.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_strain.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_strain_mean_var_rms.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_view_ccf.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_view_ccf_map.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_view_mesh.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_view_psf.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_visu_2D_slice.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_volume_phasing.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_xcca_3D_map_polar.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_xcca_3D_map_rect.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_xcca_3D_polar.py'
      adding 'bcdi-0.2.4.data/scripts/bcdi_xcca_3D_rect.py'
      adding 'tests/__init__.py'
      adding 'tests/config.py'
      adding 'tests/algorithms/__init__.py'
      adding 'tests/algorithms/test_algorithms_utils.py'
      adding 'tests/experiment/__init__.py'
      adding 'tests/experiment/test_beamline.py'
      adding 'tests/experiment/test_detector.py'
      adding 'tests/experiment/test_diffractometer.py'
      adding 'tests/experiment/test_loader.py'
      adding 'tests/experiment/test_rotation_matrix.py'
      adding 'tests/experiment/test_setup.py'
      adding 'tests/facet_recognition/__init__.py'
      adding 'tests/facet_recognition/test_facet_utils.py'
      adding 'tests/graph/__init__.py'
      adding 'tests/graph/test_graph_utils.py'
      adding 'tests/postprocessing/3572_fa.vtk'
      adding 'tests/postprocessing/__init__.py'
      adding 'tests/postprocessing/test_facet_analysis.py'
      adding 'tests/postprocessing/test_postprocessing_utils.py'
      adding 'tests/preprocessing/__init__.py'
      adding 'tests/preprocessing/test_bcdi_utils.py'
      adding 'tests/simulation/__init__.py'
      adding 'tests/simulation/test_simulation_utils.py'
      adding 'tests/simulation/test_supportMaker.py'
      adding 'tests/utils/__init__.py'
      adding 'tests/utils/test_image_registration.py'
      adding 'tests/utils/test_io_helper.py'
      adding 'tests/utils/test_parameters.py'
      adding 'tests/utils/test_parser.py'
      adding 'tests/utils/test_utilities.py'
      adding 'tests/utils/test_validation.py'
      adding 'tests/xcca/__init__.py'
      adding 'tests/xcca/test_xcca_utils.py'
      adding 'bcdi-0.2.4.dist-info/LICENSE.txt'
      adding 'bcdi-0.2.4.dist-info/METADATA'
      adding 'bcdi-0.2.4.dist-info/WHEEL'
      adding 'bcdi-0.2.4.dist-info/top_level.txt'
      adding 'bcdi-0.2.4.dist-info/RECORD'
      removing build/bdist.linux-ppc64le/wheel
      [Errno 2] No such file or directory: 'test_parser.py'
      error: [Errno 2] No such file or directory: 'build/bdist.linux-ppc64le/wheel/tests/utils/test_parser.py'
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for bcdi
  Running setup.py clean for bcdi
Failed to build bcdi
WARNING: Error parsing requirements for multidict: [Errno 2] No such file or directory: '/gpfs/easy/data/id01/inhouse/david/py38-dev/lib/python3.8/site-packages/multidict-5.2.0.dist-info/METADATA'
Installing collected packages: bcdi
  Attempting uninstall: bcdi
    Found existing installation: bcdi 0.2.3
    Uninstalling bcdi-0.2.3:
      Successfully uninstalled bcdi-0.2.3
  Running setup.py install for bcdi ... done
  DEPRECATION: bcdi was installed using the legacy 'setup.py install' method, because a wheel could not be built for it. A possible replacement is to fix the wheel build issue reported above. Discussion can be found at https://github.com/pypa/pip/issues/8368
Successfully installed bcdi-0.2.4
carnisj commented 2 years ago

I am not able to reproduce this error. It works both locally and on Maxwell cluster. What is the version of wheel installed in the virtual environment? I suspect either some issue with the venv or the gpfs

DSimonne commented 2 years ago

0.37.0

DSimonne commented 2 years ago

I reinstalled it and it worked, with the same version ¯_ (ツ)_/¯

carnisj commented 2 years ago

ok great, maybe some file got corrupted ...