Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates a consensus tree. It plots the maximum likelihood tree with bootstrap values, drift and residuals and calculates statistics for every migration event, such as migration support, standard error and p-values.
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Step1_TreeMix.sh error /usr/bin/sh: 1: dowork: not found #7
Hi
I try the script Step1_TreeMix.sh following your command line example :
sh Step1_TreeMix.sh ~/Documents/Spodo/PROJET_slittoralis/Treemix/outgroup.noN.noKNAM49.vcf.recode.p.treemix.gz 5 100 slitura 500 /usr/bin/phylip consense slitto 1 10 10
and i have this error : /usr/bin/sh: 1: dowork: not found
How can i do to run correctly the Step1_TreeMix.sh
I 'm on ubuntu 20.04 with parallel treemix and phylip installed
Best
Hi I try the script Step1_TreeMix.sh following your command line example : sh Step1_TreeMix.sh ~/Documents/Spodo/PROJET_slittoralis/Treemix/outgroup.noN.noKNAM49.vcf.recode.p.treemix.gz 5 100 slitura 500 /usr/bin/phylip consense slitto 1 10 10 and i have this error : /usr/bin/sh: 1: dowork: not found How can i do to run correctly the Step1_TreeMix.sh I 'm on ubuntu 20.04 with parallel treemix and phylip installed Best