Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates a consensus tree. It plots the maximum likelihood tree with bootstrap values, drift and residuals and calculates statistics for every migration event, such as migration support, standard error and p-values.
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Step1_TreeMix.sh error - bootstrap files not created #9
Hi,
Firstly thank you so much for making these scripts - they look exactly what I was after.
I ran the following command:
It does run but comes up with this error. Any ideas how to solve it?
There are the expected files in
test_migrations/
directory but no files in the bootstrap directory? This means that no consensus tree can be made...The
$outname"_logfile_constree_bootrep.log"
file has all the information in but nothing is placed into thebootstrap/
directoryThank you so much in advance