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carolzhou / multiPhATE2

multiPhATE with comparative genomics
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How to get the faa file for the superset gff? #39

Closed ilyavs closed 2 years ago

ilyavs commented 2 years ago

Hi, I am running multiphate2 with primary_calls = 'superset' (prodigal, phanotate and glimmer callers. Aiming to get the most comprehensive set of genes) and want to obtain both the gff and faa files. I assume the gff file is phate_sequenceAnnotation_main.gff. How can I get the corresponding faa file? Thanks, Ilya.

carolzhou commented 2 years ago

Look for the output files, protein.faa and gene.fnt.

On Mon, Aug 15, 2022 at 9:20 AM ilyavs @.***> wrote:

Hi, I am running multiphate2 with primary_calls = 'superset' (prodigal, phanotate and glimmer callers. Aiming to get the most comprehensive set of genes) and want to obtain both the gff and faa files. I assume the gff file is phate_sequenceAnnotation_main.gff. How can I get the corresponding faa file? Thanks, Ilya.

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ilyavs commented 2 years ago

Got it, thanks.