Provide CellProfiler pipeline files for the datasets

carpenter-singh-lab / 2022_Haghighi_NatureMethods

High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

BSD 3-Clause "New" or "Revised" License

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Provide CellProfiler pipeline files for the datasets #15

Open shntnu opened 1 year ago

shntnu commented 1 year ago

YJ asked:

could kindly share the CellProfiler pipeline with me if you have the CellProfiler pipeline of the LUAD dataset which can get the CellProfiler morphological profile data?

shntnu commented 1 year ago

Pipelines are at https://github.com/broadinstitute/imaging-platform-pipelines/tree/455d8ffa2a0a6cb7341868139f3f1719b9d5ea2c/

Dataset	Cell line	Pipeline set
CDRP-BBBC047-Bray	U2OS	cellpainting_u2os_20x_imagexpress_cdrp
CDRPBIO-BBBC036-Bray	U2OS	cellpainting_u2os_20x_imagexpress_cdrp
LUAD-BBBC041-Caicedo	A549	cellpainting_a549_20x_imagexpress
TA-ORF-BBBC037-Rohban	U2OS	cellpainting_u2os_20x_imagexpress_cdrp
LINCS-Pilot1	A549	cellpainting_a549_20x_phenix_bin1