High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
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Preprocess Datasets L1000 MAT file #17
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swaraj84 opened 9 months ago
@MarziehHaghighi
Could you please help with a portion of the 0-preprocess-datasets.ipynb, specifically in the following lines
from scipy.io import loadmat x = loadmat(cdrp_dataDir+'cdrp.all.prof.mat')Where the source MAT file is mentioned to be generated using https://github.com/broadinstitute/2014_wawer_pnas, which is currently not available.
Any pointers towards the source file and the operations to be performed on it would be a good head start for me.
Thank you! Swaraj