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carpentries-incubator / SDC-BIDS-IntroMRI

Introduction to MRI and BIDS
https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI
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Update anatomy-of-nifti.md #31

Closed annajiat closed 2 years ago

annajiat commented 2 years ago

For binder environment, correct path: t1_img = nib.load("../data/dicom_examples/0219191_mystudy-0219-1114/nii/dcm_anat_ses-01_T1w_20190219111436_5.nii.gz")

existing path: t1_img = nib.load("../data/dicom_examples/nii/0219191_mystudy-0219-1114_anat_ses-01_T1w_20190219111436_5.nii.gz")

reference: https://nbviewer.jupyter.org/github/carpentries-incubator/SDC-BIDS-IntroMRI/blob/gh-pages/code/02-anatomy-of-nifti.ipynb

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josephmje commented 2 years ago

Thanks @annajiat . I resolved this in #32