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carpentries-incubator / SDC-BIDS-dMRI

Introduction to dMRI
https://carpentries-incubator.github.io/SDC-BIDS-dMRI/
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Tensor Imaging (Notebook 3) #12

Closed kaitj closed 3 years ago

kaitj commented 4 years ago

Looking to also update Notebook 3 on Diffusion Tensor Imaging (DTI). This notebook should highlight what DTI is, why its important and the pros and cons.

Main things to update;

A separate notebook to be included for higher order models / more current models used in research.

jhlegarreta commented 4 years ago

@kaitj my current bandwidth is limited, but if the task is not due immediately, I would be pleased to work with you on this.

kaitj commented 4 years ago

@jhlegarreta That sounds great! Definitely not an immediate due date! We are planning on storing the processed data on OSF (https://osf.io/cmq8a/). At this point, we've only selected 10 random subjects to use!

jhlegarreta commented 4 years ago

@kaitj maybe at some point having a short meeting would be useful for me to start knowing better the ecosystem of tools required and where I could specifically start to contribute incrementally. We could you Slack whenever you have time for this.

kaitj commented 4 years ago

@jhlegarreta Sure! I am free most days (except Wednesdays). Let's set something up and we can chat about it!

jhlegarreta commented 4 years ago

@kaitj Sounds good. Maybe it will be easier to set up a date and talk if we chat through Slack? You can find me by my name or username in the neuroimaging Slack channel !

jhlegarreta commented 3 years ago

@kaitj the following item:

Better explain different quantitative metrics (e.g. FA, MD, AD, RD)

was addressed in PR #18, so I guess it can be marked as done in the issue.

kaitj commented 3 years ago

Closing this issue. Thought I had linked #64 to this previously.