carpentries-incubator / SDC-BIDS-dMRI

Introduction to dMRI
https://carpentries-incubator.github.io/SDC-BIDS-dMRI/
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BUG: Fix FSL `eddy` command #234

Closed jhlegarreta closed 1 year ago

jhlegarreta commented 1 year ago
review-notebook-app[bot] commented 1 year ago

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jhlegarreta commented 1 year ago

The execution of eddy is timing out (the build is marked as passing, though): https://github.com/carpentries-incubator/SDC-BIDS-dMRI/actions/runs/5663965000/job/15346506307?pr=234#step:13:61

but now at least the command is found. The cell was tested locally and the command is working. The rest of the notebooks are passing: https://github.com/carpentries-incubator/SDC-BIDS-dMRI/actions/runs/5663965000?pr=234

The timeout issue will be addressed in a separate PR. Cross-referencing PRs #205 and #207.

Merging.