Missing data when importing `data/actb.gtf`

carpentries-incubator / bioc-project

Introduction to the Bioconductor project

https://carpentries-incubator.github.io/bioc-project

Other

18 stars 15 forks source link

Missing data when importing `data/actb.gtf` #53

Closed milanmlft closed 2 years ago

milanmlft commented 2 years ago

Seems that something is going wrong when importing the actb.gtf file. The output doesn't show any ranges:

Screen Shot 2022-10-21 at 12 54 26

Relevant lines: https://github.com/carpentries-incubator/bioc-project/blob/2300f76c95116829a2c3464e4a70d9e1b9784412/_episodes_rmd/07-genomic-ranges.Rmd#L494-L498

I can confirm that this problem also occurs when running the Rmd locally. I checked the raw data file and there doesn't seem to be a problem with that, so the issue arises during the import.

kevinrue commented 2 years ago

Oh right, I forgot about that but yeah, I noticed it myself a while back and keep forgetting to get to it.

Gold star for anyone who fixes it :)

milanmlft commented 2 years ago

Found it :)