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carpentries-incubator / bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
https://carpentries-incubator.github.io/bioc-rnaseq
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Add verification step for raw GEO data vs. prepared CSV #105

Open ttriche opened 1 month ago

ttriche commented 1 month ago

Show the CSV file provided contains the same information as the raw data files deposited on GEO for each GSM.

Trust, but verify -- provenance is important and we cannot cut corners if we want to teach reproducible analysis skills.

github-actions[bot] commented 1 month ago

:ok: Pre-flight checks passed :smiley:

This pull request has been checked and contains no modified workflow files, spoofing, or invalid commits.

It should be safe to Approve and Run the workflows that need maintainer approval.

ttriche commented 1 month ago

Got rid of the GEOquery dependency and now this just uses base R.