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carpentries-incubator / bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
https://carpentries-incubator.github.io/bioc-rnaseq
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Should we switch to TidySummarizedExperiment? #108

Open jdrnevich opened 1 month ago

jdrnevich commented 1 month ago

It would be a bit of an overhaul, but we should consider switching everything over to tidySummarizedExperiment. This would help simplify the ggplot function coding. Would we also want to switch all transformations/subsetting to tidyverse instead of baseR?