Renumber episodes according to discussion

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:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• :dart: correct output
• :framed_picture: correct figures
• :question: new warnings
• :bangbang: new errors

Rendered Changes

:mag: Inspect the changes: https://github.com/carpentries-incubator/bioc-rnaseq/compare/md-outputs..md-outputs-PR-20

The following changes were observed in the rendered markdown documents:

 01-introduction-setup.md => 01-introduction.md     |   0
 03-setup.md (new)                                  |  27 +++++++++++++++++++++
 ...rimental-design.md => 04-experimental-design.md |  24 +++++++++---------
 04-import-annotate.md => 05-import-annotate.md     |   2 +-
 05-exploratory-qc.md => 06-exploratory-qc.md       |  14 +++++------
 ...-expression.md => 07-differential-expression.md |   8 +++---
 07-gene-set-analysis.md => 08-gene-set-analysis.md |   0
 config.yaml                                        |  13 +++++-----
 ...imental-design-rendered-unnamed-chunk-10-1.png} | Bin
 ...imental-design-rendered-unnamed-chunk-11-1.png} | Bin
 ...imental-design-rendered-unnamed-chunk-11-2.png} | Bin
 ...rimental-design-rendered-unnamed-chunk-5-1.png} | Bin
 ...rimental-design-rendered-unnamed-chunk-5-2.png} | Bin
 ...rimental-design-rendered-unnamed-chunk-6-1.png} | Bin
 ...rimental-design-rendered-unnamed-chunk-7-1.png} | Bin
 ...rimental-design-rendered-unnamed-chunk-8-1.png} | Bin
 ...rimental-design-rendered-unnamed-chunk-9-1.png} | Bin
 ...xpression-rendered-unnamed-chunk-8-1.png (gone) | Bin 20321 -> 0 bytes
 ...exploratory-qc-rendered-unnamed-chunk-10-1.png} | Bin
 ...-exploratory-qc-rendered-unnamed-chunk-5-1.png} | Bin
 ...-exploratory-qc-rendered-unnamed-chunk-6-1.png} | Bin
 ...-exploratory-qc-rendered-unnamed-chunk-7-1.png} | Bin
 ...-exploratory-qc-rendered-unnamed-chunk-8-1.png} | Bin
 ...-exploratory-qc-rendered-unnamed-chunk-9-1.png} | Bin
 ...tial-expression-rendered-unnamed-chunk-6-1.png} | Bin
 ...tial-expression-rendered-unnamed-chunk-7-1.png} | Bin
 ...tial-expression-rendered-unnamed-chunk-7-2.png} | Bin
 ...expression-rendered-unnamed-chunk-8-1.png (new) | Bin 0 -> 20411 bytes
 md5sum.txt                                         |  15 ++++++------
 29 files changed, 65 insertions(+), 38 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2023-02-27 18:18:05 +0000