search

carpentries-incubator / bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
https://carpentries-incubator.github.io/bioc-rnaseq
Other
19 stars 28 forks source link

Changes7 25 #64

Closed jdrnevich closed 1 year ago

jdrnevich commented 1 year ago

A few more updates for lessons 1-4

github-actions[bot] commented 1 year ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/carpentries-incubator/bioc-rnaseq/compare/md-outputs..md-outputs-PR-64

The following changes were observed in the rendered markdown documents:

 01-intro-to-rnaseq.md                              |   8 +-
 02-setup.md                                        |  10 +-
 03-import-annotate.md                              | 229 +++++++++++++++++----
 04-exploratory-qc.md                               |  97 ++++++---
 data/GSE96870_se.rds                               | Bin 2411112 -> 2411249 bytes
 ...4-exploratory-qc-rendered-unnamed-chunk-5-1.png | Bin 5909 -> 8759 bytes
 ...4-exploratory-qc-rendered-unnamed-chunk-6-1.png | Bin 6738 -> 16321 bytes
 ...4-exploratory-qc-rendered-unnamed-chunk-9-1.png | Bin 26656 -> 30029 bytes
 md5sum.txt                                         |  10 +-
 setup.md                                           |   2 +-
 10 files changed, 268 insertions(+), 88 deletions(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2023-07-26 13:28:46 +0000