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carpentries-incubator / bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
https://carpentries-incubator.github.io/bioc-rnaseq
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Expand episode 1 #75

Closed csoneson closed 1 year ago

github-actions[bot] commented 1 year ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/carpentries-incubator/bioc-rnaseq/compare/md-outputs..md-outputs-PR-75

The following changes were observed in the rendered markdown documents:

 01-intro-to-rnaseq.md                              | 121 ++++++++++++++++++---
 03-import-annotate.md                              |   5 +-
 04-exploratory-qc.md                               |   2 +-
 06-gene-set-analysis.md                            |  20 ++--
 ...tial-expression-rendered-unnamed-chunk-19-1.png | Bin 22611 -> 22630 bytes
 ...ne-set-analysis-rendered-unnamed-chunk-15-1.png | Bin 191049 -> 191077 bytes
 fig/alternative_splicing_sub.png (new)             | Bin 0 -> 851001 bytes
 fig/factors-affecting-measurements.png (new)       | Bin 0 -> 90935 bytes
 fig/heatmap-example.png (new)                      | Bin 0 -> 22611 bytes
 fig/maPlot-example.png (new)                       | Bin 0 -> 30027 bytes
 fig/rnaseq_martin_wang.png (new)                   | Bin 0 -> 1609633 bytes
 md5sum.txt                                         |  36 +++---
 setup.md                                           |   8 +-
 13 files changed, 142 insertions(+), 50 deletions(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2023-09-02 13:52:22 +0000