:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.
If you have files that automatically render output (e.g. R Markdown), then you should check for the following:
The following changes were observed in the rendered markdown documents:
03-import-annotate.md | 2 +-
04-exploratory-qc.md | 14 +-
05-differential-expression.md | 11 +-
06-extra-design.md | 37 +-
07-gene-set-analysis.md | 54 +-
config.yaml (new) | 86 +
...ratory-qc-rendered-est-size-factors-1.png (new) | Bin 0 -> 16321 bytes
fig/04-exploratory-qc-rendered-heatmap-1.png (new) | Bin 0 -> 30029 bytes
...04-exploratory-qc-rendered-lib-size-1.png (new) | Bin 0 -> 8759 bytes
...ratory-qc-rendered-mean-sd-plot-raw-1.png (new) | Bin 0 -> 12063 bytes
...ratory-qc-rendered-mean-sd-plot-vst-1.png (new) | Bin 0 -> 16185 bytes
fig/04-exploratory-qc-rendered-pca-1.png (new) | Bin 0 -> 12269 bytes
...ssion-rendered-estimate-dispersions-1.png (new) | Bin 0 -> 57892 bytes
...al-expression-rendered-heatmap-time-1.png (new) | Bin 0 -> 22620 bytes
...rential-expression-rendered-plot-ma-1.png (new) | Bin 0 -> 31133 bytes
...al-expression-rendered-res-time-lfc-1.png (new) | Bin 0 -> 30027 bytes
fig/06-extra-design-rendered-all-times-1.png (new) | Bin 0 -> 10802 bytes
...esign-rendered-compare-sex-time-int-1.png (new) | Bin 0 -> 9036 bytes
...esign-rendered-compare-sex-time-int-2.png (new) | Bin 0 -> 8716 bytes
...ign-rendered-compare-tests-sex-time-1.png (new) | Bin 0 -> 8554 bytes
...ign-rendered-compare-tests-sex-time-2.png (new) | Bin 0 -> 8789 bytes
...06-extra-design-rendered-cooccplots-1.png (new) | Bin 0 -> 11192 bytes
...06-extra-design-rendered-cooccplots-2.png (new) | Bin 0 -> 11464 bytes
...a-design-rendered-factorial-combine-1.png (new) | Bin 0 -> 16920 bytes
...tra-design-rendered-factorial-noint-1.png (new) | Bin 0 -> 14059 bytes
...a-design-rendered-factorial-withint-1.png (new) | Bin 0 -> 16181 bytes
...xtra-design-rendered-male-vs-female-1.png (new) | Bin 0 -> 7411 bytes
...esign-rendered-male-vs-female-noint-1.png (new) | Bin 0 -> 6128 bytes
fig/06-extra-design-rendered-paired-1.png (new) | Bin 0 -> 23304 bytes
...-extra-design-rendered-vis-sex-time-1.png (new) | Bin 0 -> 19176 bytes
...ra-design-rendered-vis-sex-time-int-1.png (new) | Bin 0 -> 21309 bytes
...gn-rendered-vis-sex-time-int-single-1.png (new) | Bin 0 -> 16845 bytes
...-design-rendered-within-and-between-1.png (new) | Bin 0 -> 19088 bytes
...-design-rendered-within-and-between-2.png (new) | Bin 0 -> 19957 bytes
...-analysis-rendered-compare-universe-1.png (new) | Bin 0 -> 112805 bytes
...ene-set-analysis-rendered-hypergeom-1.png (new) | Bin 0 -> 191059 bytes
...-analysis-rendered-more-enrichplots-1.png (new) | Bin 0 -> 273764 bytes
...-analysis-rendered-more-enrichplots-2.png (new) | Bin 0 -> 318822 bytes
...t-analysis-rendered-plot-enrichment-1.png (new) | Bin 0 -> 147461 bytes
...lysis-rendered-plot-enrichment-padj-1.png (new) | Bin 0 -> 216885 bytes
...-set-analysis-rendered-plot-up-down-1.png (new) | Bin 0 -> 147379 bytes
...7-gene-set-analysis-rendered-plot-z-1.png (new) | Bin 0 -> 129401 bytes
...-set-analysis-rendered-venn-diagram-1.png (new) | Bin 0 -> 28328 bytes
md5sum.txt | 12 +-
renv.lock (new) | 2776 ++++++++++++++++++++
45 files changed, 2926 insertions(+), 66 deletions(-)
What does this mean?
If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.
This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.
Thank you!
Thank you for your pull request :smiley:
:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.
If you have files that automatically render output (e.g. R Markdown), then you should check for the following:
Rendered Changes
:mag: Inspect the changes: https://github.com/carpentries-incubator/bioc-rnaseq/compare/md-outputs..md-outputs-PR-80
The following changes were observed in the rendered markdown documents:
What does this mean?
If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.:stopwatch: Updated at 2023-09-08 10:53:16 +0000