carpentries-incubator / fair-bio-practice

FAIR in (biological) practice
https://carpentries-incubator.github.io/fair-bio-practice/
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Zenodo (or Figshare) showcase #29

Open tzielins opened 3 years ago

tzielins commented 3 years ago

We need a good example dataset in Zenodo (or Figshare, I think I prefer zenodo)

Good data set:

Maybe Andrew know some from his Covid curator activity.

Finding by browsing in zenoodo looks tricky, some search by topic or maybe it will be easier from some paper (how to find papers that deposited to Zenodo though).

It may be easier and faster and more educative to make our own "perfect" deposit, which then will be used for showcase.

Assemble data from your publish papers (faking data for fake deposit is too much), lets base on what you have and published.

For example, based on the full leaf imaging of Benedict (which Andrew recently released):. Take some of the images, combine with extarcted timeseries, the matlab data file, the matlab code. Could drop a file with imaging protocol description. Then a file_organization.txt that explains layout and naming conventions. Then a readme

And probably compacted readme as zenodo description plus some tags (if zenodo supports those).

I know it is a lot of work. But the perfect example could be also used then in working in files and potentially in writing readmes episode.

Copy pasting from own papers and lab notes may actually be faster than searching in zenodo. It will all depends if your own data are complex enough, to justify some inner folder structures, naming or intersting readme. I would say any paper that useses more than one experimental technique is a good candidate.

You know your work, so we can have a call and you could show what you could wrap as a deposit.