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carpentries-incubator / pangenomics

Pangenome Analysis in Prokaryotes Lesson
https://carpentries-incubator.github.io/pangenomics/
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Setup #15

Open Czirion opened 1 year ago

Czirion commented 1 year ago

1) Setup section has the Metagenomics lesson information, not the Pangenomics 2) For a local installation I would suggest providing the yaml files for the environments, instead of the individual installations (or both options).

Czirion commented 1 year ago

Currently we have 3 environments: ncbi-gneome-download Prokka_Global Pangenomics_Global

Decide if keeping the 3 or make just 1

Czirion commented 1 year ago

Intentar poner todo en un ambiente y si no se puede, poner Anvio en un ambiente y todo lo demás en otro (o varios) Descirbir el setup con esos ambientes y ponerlo en https://czirion.github.io/pangenomics-workshop/setup.html