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carpentries-incubator / pangenomics

Pangenome Analysis in Prokaryotes Lesson
https://carpentries-incubator.github.io/pangenomics/
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Improve TDA episodes #42

Closed nselem closed 7 months ago

nselem commented 1 year ago

Develop episode 10-tda-in-pangenomes.md

shadayguerrero commented 1 year ago

simplicial complex simplex examples Filtration ViteroisRips check simplicial homology connected component betti 0 betti-holes 1

nselem commented 1 year ago

Create an example of a family that should connect after relaxing the parameter in a small set of families.

HaydeePeruyero commented 1 year ago

Falta explicar más a qué se quiere llegar con el episodio. Un poco más explícito que "apply TDA to describe Pangenomes" y ahorita eso sólo está en Questions, hay que ponerlo aquí en el texto.

Czirion commented 1 year ago

Discutir el significado de que haya familias que comparten genes

nselem commented 7 months ago

We added an episode of HGT in resistance genes and it integrates well with Pangenomic lesson