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carpentries-incubator / workflows-nextflow

Workflow management with Nextflow and nf-core
https://carpentries-incubator.github.io/workflows-nextflow/
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18 stars 29 forks source link

Review suggestions #112

Closed bobturneruk closed 2 months ago

bobturneruk commented 2 months ago

Suggestions for minor changes based on a review of the material.

github-actions[bot] commented 2 months ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/carpentries-incubator/workflows-nextflow/compare/md-outputs..md-outputs-PR-112

The following changes were observed in the rendered markdown documents:

 01-getting-started-with-nextflow.md | 13 +++++--------
 02-workflow_parameters.md           |  9 ++++++---
 03-channels.md                      | 10 +++++-----
 04-processes-part1.md               |  1 +
 06-workflow.md                      |  3 ++-
 07-operators.md                     |  6 +++---
 08-reporting.md                     |  6 +-----
 09-configuration.md                 |  2 +-
 10-workflow_checkpoint_caching.md   |  8 ++++----
 11-Simple_Rna-Seq_pipeline.md       |  8 +++-----
 12-nfcore.md                        |  4 ----
 index.md                            |  2 +-
 md5sum.txt                          | 26 +++++++++++++-------------
 setup.md                            |  5 +++--
 14 files changed, 48 insertions(+), 55 deletions(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2024-04-23 10:34:35 +0000