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carpentries-incubator / workflows-nextflow

Workflow management with Nextflow and nf-core
https://carpentries-incubator.github.io/workflows-nextflow/
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wc.nf script is missing? #12

Closed tomsing1 closed 2 years ago

tomsing1 commented 3 years ago

The first lesson refers to a wc.nf script in the scripts folder:

Open the file wc.nf in the script directory with your favourite text editor.

It seems this folder is not included in the material downloaded from Seqera. 

ls
data        env.yml     hello.nf    parsing     script3.nf  script6.nf
docs        exercises   mail.config script1.nf  script4.nf  script7.nf
dsl2        hands-on    nextflow.config script2.nf  script5.nf  setup

Perhaps it has moved? Or perhaps I misunderstood and learners are actually expected to create a scripts folder and the wc.nf script within it?

Thanks a ton for creating the nextflow training material, super useful! Thomas

tomsing1 commented 3 years ago

Ah, I think you might be in the process of changing the training datasets (see issue #3 ), and the wc.nf refers to the new data.
Anyway, perhaps my commend about the missing scripts folder is still useful.

ggrimes commented 3 years ago

Hi @tomsing1

Thanks for looking through my material this is super helpful. I haven't worked out the best place to put the scripts and data for the exercises yet. I am also in the process of updating the material to include DSL2 from the beginning, so there will be more changes to come.

ggrimes commented 2 years ago

The files directory now contains all the scripts for the workshop