carpentries-incubator / workflows-nextflow

Workflow management with Nextflow and nf-core
https://carpentries-incubator.github.io/workflows-nextflow/
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$basedir variable might need to be introduced #16

Closed tomsing1 closed 3 years ago

tomsing1 commented 3 years ago

When the publishDir directive is introduced the $basedir variable is mentioned. Perhaps it would be useful to introduce it as well?

ggrimes commented 3 years ago

I will try and remove any references to baseDirin the lesson as it has been deprecated in favour ofprojectDir since 20.04.0

https://www.nextflow.io/docs/latest/script.html?highlight=basedir