search

carrineblank / MicrO

A Microbial Ontology of Phenotypic and Metabolic Characters, Assays, and Culture Media Found in Prokaryotic Taxonomic Descriptions
Other
6 stars 3 forks source link

Fix IRIs of imported ontology subsets #5

Closed ramonawalls closed 8 years ago

ramonawalls commented 8 years ago

The imported ontologies still have ontofox IRIs, so they don't resolve when the ontology is opened in Protege. They should either use obo foundry purls or direct links to the github location.

ramonawalls commented 8 years ago

I think this one is really important to fix before the masuscript is reviewed! @carrineblank Do you have time to work on this with me over the weekend?

ramonawalls commented 8 years ago

I think it would be better to name the import files something like go_imports.owl or go_micro.owl rather than GO.owl, so as to avoid confusion with the original go.owl file that contains the Gene Ontology.

ramonawalls commented 8 years ago

We can fix this now by using the github IRIs for import files while we wait for the OBO Foundry YAML file to be generated for editing PURLs OBOFoundry/OBOFoundry.github.io#147

carrineblank commented 8 years ago

Renamed import files to BSPO_imports.owl (etc).

carrineblank commented 8 years ago

Replaced file imports with URL imports using the GitHub url addresses.

carrineblank commented 8 years ago

Issues have been corrected.