what target sequence should I use

carringtonlab / TargetFinder

Plant small RNA target prediction tool

MIT License

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what target sequence should I use #2

Closed juancresc closed 6 years ago

juancresc commented 6 years ago

I know this could be off-topic but I cannot find an answer to this elsewhere yet. Should I use CDs or cDNA for searching miRNA target?

nfahlgren commented 6 years ago

Where possible you want to use a full-length transcript database that includes both coding and non-coding sequences because known plant miRNAs can target both types of regions.