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cassianobecker / dnn

MIT License
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Dev dti processing #22

Closed lindenmp closed 4 years ago

lindenmp commented 4 years ago

I have written code that:

  1. takes outputs from dtifit and converts them to be ANTs compliant
  2. registers FA map to an FA template and moves the DTI image as well (ANTs)
  3. reorients the warped DTI image (ANTs)
  4. re-extracts the eigenvectors and eigenvalues from the warped/reoriented DTI (ANTs)
  5. masks the eigenvectors and eigvenlues using an FA mask that matches the FA template

Need to include an ANTs install for each person We can change the template/mask combination any time we want, let's discuss.