Open lindenmp opened 4 years ago
I have created a 1.25mm FA template we can use and added it to dataset/hcp/res/templates/
Also, we can now choose between an inclusive white matter mask (e.g., FMRIB58_FA-mask_125mm_edit.nii.gz
) and one restricted to the FA skeleton (e.g., FMRIB58_FA-skeleton_125mm.nii,gz
).
The default in dataset/hcp/scripts/process/conf/args.ini
is now set to the inclusive white matter mask:
[TEMPLATE]
folder = /Users/lindenmp/Dropbox/Work/ResProjects/dnn/dataset/hcp/res/templates
template = FMRIB58_FA_125mm.nii.gz
mask = FMRIB58_FA-mask_125mm_edit.nii.gz
Do we do need to add this to experiments/hcp/conf/args.ini
as well??
Currently we're using 2mm/1mm FA template from FSL. Would be good to use a template that is in the same res as HCP DWI data (1.25mm)