Closed lrvdijk closed 2 years ago
This version implements the Viterbi algorithm for the Tesserae Pair HMM model in Cython. This also includes an improvement to the model, now using a silent reference jump state which removes a quadratic term from the runtime.
This version implements the Viterbi algorithm for the Tesserae Pair HMM model in Cython. This also includes an improvement to the model, now using a silent reference jump state which removes a quadratic term from the runtime.