Code to calculate Poisson and Normal distribution expectations
0.5
0.5
Code to count 0 coverage occurences
0.5
0.5
Code to plot ex1_*_cov.png
0.5
0.5
Code to generate the edges of the de Bruijn graph
1
0.75
README.md file with answers to questions in the assignment
Exercise
Points Possible
Grade
Answer to question in Step 1.1
0.5
0.5
Answer to questions in Steps 1.3 - 1.5
1
1
Answer to question in Step 2.4
0.5
0.5
Answer to question in Step 2.5
0.5
0
Answer to question in Step 2.6
0.5
0.5
Answer to question in Step 3.1
0.5
0.5
Answer to question in Step 3.2
0.5
0.5
Figures for exercises 1 and 2
Exercise
Points Possible
Grade
ex1_3x_cov.png clearly labelled
0.5
0.5
ex1_10x_cov.png clearly labelled
0.5
0.5
ex1_30x_cov.png clearly labelled
0.5
0.5
ex2_digraph.png (the output of dot)
0.5
0.5
Total: 9.25/10
Nice work! For full credit:
Step 2.1: Take another look at line 60 in your code; there is a slight error preventing all the edges from being found.
Step 2.5: The sequence you provided is a list of kmers. To generate a genome sequence, consider where these kmers can overlap to form a longer sequence.
Python script with all code for the assignment
ex1_*_cov.png
README.md
file with answers to questions in the assignmentFigures for exercises 1 and 2
ex1_3x_cov.png
clearly labelledex1_10x_cov.png
clearly labelledex1_30x_cov.png
clearly labelledex2_digraph.png
(the output ofdot
)Total: 9.25/10
Nice work! For full credit: