Python script that performs alignment based on user input
8/8
Exercise
Points Possible
Grade
Read in inputs
2
2
Initialize matrices
1
1
Populate matrices
2
2
Perform traceback
2
2
Write alignment to file
0.5
0.5
Print out alignment score and number of gaps in each sequence
0.5
0.5
DNA alignment file
0.5/0.5
AA alignment file
0.5/0.5
README.md with alignment score and number of gaps in each sequence for each alignment
1/1
Total: 10/10
Nice work!
Weirdly, your DNA alignment and alignment score don't look right, but 1) your gap count is correct and 2) I ran your code and got the right answers, so I'm not really sure what happened there... maybe you used the wrong gap penalty or scoring matrix? Not sure...
Python script that performs alignment based on user input
8/8
DNA alignment file
0.5/0.5
AA alignment file
0.5/0.5
README.mdwith alignment score and number of gaps in each sequence for each alignment1/1
Total: 10/10
Nice work!
Weirdly, your DNA alignment and alignment score don't look right, but 1) your gap count is correct and 2) I ran your code and got the right answers, so I'm not really sure what happened there... maybe you used the wrong gap penalty or scoring matrix? Not sure...